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Publications

Publications from GGBC members

2018

J Bengtsson-Palme, RT Richardson, M Meola, C Wurzbacher, ÉD Tremblay, K Thorell, K Kanger, KM Eriksson, GJ Bilodeau, RM Johnson, M Hartmann, RH Nilsson (2018) Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. Bioinformatics. DOI: 10.1093/bioinformatics/bty482

Gunnarsson B, Wallin J, Klingberg J (2018) Predation by avian insectivores on caterpillars is linked to leaf damage on oak (Quercus robur). Oecologia DOI: 10.1007/s00442-018-4234-z

Faurby S, Antonelli A (2018) Evolutionary and ecological success is decoupled in mammals. Journal of Biogeography. doi: 10.1111/jbi.1341

Ritter CD, Zizka A, Barnes C, Nilsson RH, Roger F, Antonelli A (2018) Locality or habitat? Exploring predictors of biodiversity in Amazonia. Ecography. doi: 10.1111/ecog.03833

Carrillo-Briceño JD, Carrillo JD, Aguilera OA, Sanchez-Villagra MR (2018) Shark and ray diversity in the Tropical America (Neotropics)—an examination of environmental and historical factors affecting diversity. PeerJ 6: e5313, doi: 10.7717/peerj.5313.

Woutersen A, Jardine PE, Bogotá-Angel RG, Zhang H, Silvestro D, Antonelli A, Gogna E, Erkens RHJ, Gosling WD, Dupont-Nivet G, Hoorn C (2018) A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon Nitraria L.(Nitrariaceae). PeerJ 6: e5055, doi: 10.7717/peerj.5055.

Andermann T, Fernandes AM, Olsson U, Töpel M, Pfeil B, Oxelman B, Aleixo A, Faircloth BC, Antonelli A (2018) Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. Systematic Biology DOI: 10.1093/sysbio/syy039

Antonelli A, Zizka A, Carvalho FA, Scharn R, Bacon CB, Silvestro D, Condamine FL (2018) Amazonia is the primary source of Neotropical biodiversity. PNAS. DOI: 10.1073/pnas.1713819115

Bacon CD, Velasquez-Puentes FJ, Hoorn C, Antonelli A (2018) Iriarteeae palms tracked the uplift of Andean Cordilleras. Journal of Biogeography DOI: 10.1111/jbi.13350

Jaramillo C, Montes C, Cardona A, Silvestro D, Antonelli A, Bacon CD (2018) Comment (1) on “Formation of the Isthmus of Panama” by O’Dea et al. Science Advances. DOI: 10.1126/sciadv.1602321

Sjöman H, Hirons AD, Bassuk NL (2018) Magnolias as urban trees – a preliminary evaluation of drought tolerance in seven magnolia species. Arboricultural Journal. DOI: 10.1080/03071375.2017.1415554

Eiserhardt WL, Antonelli A, Bennett DJ, Botigué LR, Burleigh JG, Dodsworth S, Enquist BJ, Forest F, Kim JT, Kozlov AM, Leitch IJ, Maitner BS, Mirarab S, Piel WH, Pérez‐Escobar OA, Pokorny L, Rahbek C, Sandel B, Smith SA, Stamatakis A, Vos RA, Warnow T, Baker WJ (2018) A roadmap for global synthesis of the plant tree of life. American Journal of Botany. DOI: https://doi.org/10.1002/ajb2.1041

Pérez-Escobar OA, Cámara-Leret R, Antonelli A, Bateman R, Bellot S, Chomicki G, Cleef A, Diazgranados M, Dodsworth S, Jaramillo C, Madriñan S, Olivares I, Zuluaga A, Bernal R (2018) Mining threatens Colombian ecosystems. Science 359(6383): 1475-1475. doi:10.1126/science.aat4849

Franco-Belussi L, De Oliveira C, Sköld HN (2018) Regulation of eye and jaw colouration in three-spined stickleback Gasterosteus aculeatus. Journal of Fish Biology. DOI: 10.1111/jfb.13620

Cano A, Bacon CD, Stauffer FW, Antonelli A, Serrano-Serrano ML, Perret M (2018) The roles of dispersal and mass extinction in shaping palm diversity across the Caribbean. Journal of Biogeography. DOI: 10.1111/jbi.13225

Melo WA, Freitas CG, Bacon CD, Collevatti RG (2018) The road to evolutionary success: insights from the demographic
history of an Amazonian palm. Heredity. DOI: 10.1038/s41437-018-0074-1

Stronen AV, Iacolina L, Pertoldi C, Kusza S, HulvaIhor P, Kojola D, Faurby S (2018) The use of museum skins for genomic analyses of temporal genetic diversity in wild species. Conservation Genetics Resources. doi: 10.1007/s12686-018-1036-x

Hoorn C, Perrigo A, Antonelli A (2018) Mountains, Climate and Biodiversity. Wiley. 584 pp.

Korshunova T, Lundin K, Malmberg K, Picton B, Martynov A (2018) First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution. PLoS ONE. doi:10.1371/journal.pone.0192177

Antonelli A, Perrigo A (2018) The science and ethics of extinction. Nature Ecology and Evolution. doi:10.1038/s41559-018-0500-z

Silva GAR, Antonelli A , Lendel A, Moraes EM, Manfrin MH (2018) The impact of early Quaternary climate change on the diversification and population dynamics of a South American cactus species. Journal of Biogeography 45: 76-88. doi:10.1111/jbi.13107

Antonelli A & Perrigo A (2018) The pitfalls of taking science to the public. Science 359: 283. doi: 10.1126/science.aar8468

Faurby S, Araújo MB (2018) Anthropogenic range contractions bias species climate change forecasts. Nature Climate Change. doi:10.1038/s41558-018-0089-x

Matos-Maraví P, Clouse RM, Sarnat EM, Economo EP, LaPolla JS, Borovanska M, Rabeling C, Czekanski-Moir J, Latumahina F, Wilson EO, Janda M. (2018) An ant genus-group (Prenolepis) illuminates the biogeography and drivers of insect diversification in the Indo-Pacific. Molecular Phylogenetics and Evolution 123: 16-25. doi: 10.1016/j.ympev.2018.02.007

Guedes TB, Sawaya RJ, Zizka A, Laffan S, Faurby S, Pyron RA, Bérnils RS, Jansen M, Passos P, Prudente ALC, Cisneros-Heredia DF, Braz HB, Nogueira CC, Antonelli A (2018) Patterns, biases and prospects in the distribution and diversity of Neotropical snakes. Global Ecology and Biogeography 27: 14–21. doi: 10.1111/geb.12679

Eriksson JS, de Sousa F, Bertrand YJK, Antonelli A, Oxelman B, Pfeil BE (2018) Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae). BMC Evolutionary Biology. doi:10.1186/s12862-018-1127-z

Sandom CJ, Faurby S, Svenning JC, Burnham D, Dickman A, Hinks A, Macdonald EA, Ripple B, Williams J, Macdonald D (2018) Learning from the past to prepare for the future: Felids face continued threat from declining prey richness. Ecography 41: 140-152, doi: 10.1111/ecog.03303

Conradie W, Bittencourt-Silva GB, Farooq HM, Loader SP, Menegon M & Tolley KA (2018) New species of Mongrel Frogs (Pyxicephalidae: Nothophryne) for northern Mozambique inselbergs. African Journal of Herpetology. DOI: 10.1080/21564574.2017.1376714

Rolland J, Silvestro D, Litsios, G, Faye L, Salamin N (2018) Clownfishes evolution below and above the species level. Proc. R. Soc. B 285: 20171796 DOI: 10.1098/rspb.2017.1796

Zizka A, Antonelli A (2018) Mountains of diversity. Nature. DOI: 10.1038/d41586-018-02062-6

Ryberg M, Nilsson RH (2018) New light on names and naming of dark taxa. MycoKeys 30: 31-39. DOI: 10.3897/mycokeys.30.24376

Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. DOI: 10.3897/mycokeys.28.20887

Guedes TB, Sawaya RJ, Zizka A, Laffan S, Faurby S, Pyron RA, Bernils RS, Jansen M, Passos P, Prudente ALC, Cisneros-Heredia DF, Braz HB, Nogueira CdC, Antonelli A. (2018) Patterns, biases and prospects in the distribution and diversity of Neotropical snakes. Global Ecology and Biogeography DOI: 10.1111/geb.12679

2017

Korshunova, T., Martynov, A., Bakken, T., Evertsen, J., Fletcher, K., Mudianta, I W., Saito, H., Lundin, K., Schrödl, M. & Picton, B. (2017) Polyphyly of the traditional family Flabellinidae affects a major group of Nudibranchia (Mollusca, Gastropoda): aeolidacean taxonomic reassessment with description of several new families, genera and species. ZooKeys 717: 1–139. doi: 10.3897/zookeys.717.21885

Lundin, K., Korshunova, T., Malmberg, K. & Martynov, A. (2017) Intersections of historical museum collections and modern systematic methods: the case of a relict population of the Arctic nudibranch Dendronotus velifer G.O. Sars 1878 in a Swedish fjord. Contributions to Zoology, 86 (4) 303-318.

Branch IR, Guyton J, Schmitz A, Barej MF, Naskrecki P, Farooq H, Verburgt L, Rödel MR (2017) Description of a new flat gecko (Squamata: Gekkonidae: Afroedura) from Mount Gorongosa, Mozambique. Zootaxa DOI: 10.11646/zootaxa.4324.1.8

Hagen O, Andermann T, Quental TB, Antonelli A, Silvestro D (2017) Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies. Systematic Biology, DOI: 10.1093/sysbio/syx082

Wurzbacher C, Nilsson RH, Rautio M, Peura S (2017) Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds.
ISME Journal. DOI: 10.1038/ismej.2017.54

Sandova M, Nilsson RH, Kolarik M. (2017) Relationships within Capitotricha bicolor (Lachnaceae, Ascomycota) as inferred from ITS rDNA sequences, including some notes on the Brunnipila and Erioscyphella clades. Mycological Progress. DOI: 10.1007/s11557-017-1346-5

Nieto-Blázquez ME, Antonelli A, Roncal J (2017) Historical biogeography of endemic seed plant genera in the Caribbean: Did GAARlandia play a role? Ecology and Evolution. DOI: 10.1002/ece3.3521.

Nilsson RH, Sánchez-García M, Ryberg MK, Abarenkov K, Wurzbacher C, Kristiansson E. (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24.

Pessoa MCR, Persson C, Antonelli A, Barbosa MRV (2017) First record of Chomelia triflora (J.H. Kirkbr.) Delprete & Achille (Rubiaceae) from Brazil. Check List 13: 159-162. DOI: 10.15560/13.4.159

Jaramillo C, Montes C, Cardona A, Silvestro D, Antonelli A, Bacon CD (2017) Comment (1) on “Formation of the Isthmus of Panama” by O’Dea et al. Science Advances. DOI: 10.1126/sciadv.1602321

Lehtonen S, Silvestro D, Karger DN, Scotese C, Tuomisto H, Kessler M, Peña C, Wahlberg N, Antonelli A (2017) Environmentally driven extinction and opportunistic origination explain fern diversification patterns. Scientific Reports. DOI: 10.1038/s41598-017-05263-7

Cámara-Leret R, Faurby S, Macía MJ, Balslev H, Göldel B, Svenning JC, Kissling WD, Rønsted N, Saslis-Lagoudakis CH (2017) Fundamental species traits explain provisioning services of tropical American palms. Nature Plants 3:16220. DOI: 10.1038/nplants.2016.220

Sandom CJ, Faurby S, Svenning JC, Burnham D, Dickman A, Hinks A, Macdonald EA, Ripple B, Williams J, Macdonald D (2017) Learning from the past to prepare for the future: Felids face continued threat from declining prey richness. Ecography. DOI: 10.1111/ecog.03303

Claudel C, Buerki S, Chatrou LW, Antonelli A, Alvarez N, Hetterscheid W (2017) Large-scale phylogenetic analysis of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation. Botanical Journal of the Linnean Society 184: 32-45. DOI: 10.1093/botlinnean/box013

Gonçalez VM, Pfeil BE, Antonelli A, Duarte MC (2017) Two new species of Pavonia (Malvoideae, Malvaceae) from southern Bahia, Brazil. Phytotaxa 305:97-103, doi: 10.11646/phytotaxa.305.2.3

Antonelli A (2017) Drivers of bioregionalisation. Nature Ecology and Evolution 1, 0114 DOI: 10.1038/s41559-017-0114

Antonelli A, Hettling H, Condamine FL, Vos K, Nilsson RH, Sanderson J, Sauquet H, Scharn R, Silvestro D, Töpel M, Bacon CD, Oxelman B, Vos RA (2017) Towards a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. Systematic Biology 66 :152–166 DOI: 10.1093/sysbio/syw066

Edler D, Guedes T, Zizka A, Rosvall M, Antonelli A (2017) Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions. Systematic Biology 66:197–204. DOI: 10.1093/sysbio/syw087

Perez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarin D, Matzke N, Silvestro D, Antonelli A (2017). Recent origin of Neotropical orchids in the world’s richest plant biodiversity hotspot. New Phytologist. DOI: 10.1111/nph.14629.

Ritter CD, McGrate G, Nilsson RH, Fearnside PM, Palme U, Antonelli A (2017) Environmental Impact Statement of biodiversity: Challenges and prospects in biologically diverse environments in Brazilian Amazonia. Biological Conservation 206: 161–168.
 

Bacon CD, Moraes M, Jaramillo C, Antonelli A (2017). Endemic palm species shed light on habitat shifts and the assembly of the Cerrado and Restinga floras. Molecular Phylogenetics and Evolution 110:127-133. DOI: 10.1016/j.ympev.2017.03.013

Töpel M, Zizka A, Calió MF, Scharn R, Silvestro D, Antonelli A (2017) SpeciesGeoCoder: Fast categorization of species occurrences for analyses of biodiversity, biogeography, ecology and evolution. Systematic Biology 66:145–151. DOI:10.1093/sysbio/syw064

Cruz GAS, Zizka G, Silvestro D, Leme EMC, Schulte K, Benko-Iseppon AM (2017) Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr. (Bromeliaceae). Molecular Phylogenetics and Evolution. 107: 152-165.

Maldonado C, Persson C, Alban J, Antonelli A, Rønsted N (2017) Cinchona anderssonii (Rubiaceae), a new overlooked species from Bolivia. PhytoTaxa, 297: 203–208.

Maldonado C, Barnes CJ, Cornett C, Holmfred E, Hansen SH, Persson C, Antonelli A, Rønsted N (2017) Phylogeny Predicts the Quantity of Antimalarial Alkaloids Within the Iconic Yellow Cinchona Bark (Rubiaceae: Cinchona calisaya). Frontiers in Plant Science 8:391.

Radek R, Wurzbacher C, Gisder S, Nilsson RH, Owerfeldt A, Genersch E, Kirk PM, Voigt K (2017) Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota. MycoKeys 25: 31-50. DOI: 10.3897/mycokeys.25.12446

Rova J, Persson C, Ljungstrand E, Antonelli A (2017) Lectotypification of Pentagonia macrophylla (Rubiaceae) revisited. Phytotaxa. DOI:10.11646/phytotaxa.311.3.10

Obst M, Vicario S, Lundin K, Berggren M, Karlsson A, Haines R, Williams A, Goble C, Mathew C, Güntsch A (2017) Marine long-term biodiversity assessment suggests loss of rare species in the Skagerrak and Kattegat region. Marine Biodiversity. DOI:10.1007/s12526-017-0749-5

Pimiento C, Griffin JN, Clements CF, Silvestro D, Varela S, Uhen MD, Jaramillo C (2017) The Pliocene marine megafauna extinction and its impact on functional diversity. Nature Ecology and Evolution DOI: 10.1038/s41559-017-0223-6

Töpel M, Pinder MIM, Johansson ON, Kourtchenko P, Godhe A, Clarke AK (2017) Genome Sequence of Roseovarius mucosus Strain SMR3, Isolated from a Culture of the Diatom Skeletonema marinoi. Genome Announcements 5: 22. DOI: 10.1128/genomeA.00394-17

Pedersen RØ , Faurby S, Svenning J-C (2017) Shallow size-density relations within mammal clades suggest greater intra-guild ecological impact of large-bodied species. Journal of Animal Ecology DOI: 10.1111/1365-2656.12701

Jeppson M, Altés A, Moreno G, Nilsson RH, Loarce Y, de Bustos A, Larsson E (2017) Unexpected high species diversity among European stalked puffballs – a contribution to the phylogeny and taxonomy of the genus Tulostoma (Agaricales). MycoKeys 21: 33-88. DOI: 10.3897/mycokeys.21.12176

Page Manager: Allison Perrigo|Last update: 8/21/2018
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